Structure to point cloud

Generation of point cloud

amo pdb2points \
-threads 1 \
-hlog \
-jobname [JOB_NAME] \
-pdb <INPUT_PDB_FILE> \
-n [NUMBER] \ # density of point cloud
-chian A \
-backbone [BOOL] \ # backbone of a protein, now supports N, CA, C, O, CB
-output [OUTPUT_DIRECTORY]

Mesh representation

Using the Computational Geometry Algorithms Library, we represent a protein structure in mesh.