Data visualization

How to visualize high-dimensional data?

Based on Leri, one can easily employ the t-SNE to analyze her/his high-dimensional data and get the interactive plotting.

amo stats_tsne \
-mat <the_data_in_CSV_format> \
-output <user_defined> \
-jobname <user_defined>

The recognized format of CSV is shown below,

#sample, column 1, column2, ..., column i, ..., column N
name 1, 1.0, 1.0, ..., 1.0, ..., 1.0
name 2, 1.0, 1.0, ..., 1.0, ..., 1.0
.
.
.
name M, 1.0, 1.0, ..., 1.0, ..., 1.0

As shown above, the first line MUST starts with "#".