Sequence energy

Compute energy

As an important measurement, we define a 'energy' for a sequence and compute it from the potential of its family. Put either one sequence or multiple sequence in a file using -msa to read.

amo sequence_energy \
-threads 1 \
-hlog \
-jobname [JOB_NAME] \
-msa <INPUT_SEQUENCE_FILE> \
-mat <POTENTIAL_FILE> \
-output [OUTPUT_DIRECTORY]